AMBER Archive (2004)

Subject: Re: AMBER: sander8

From: Carlos Simmerling (
Date: Sat Oct 09 2004 - 12:39:34 CDT

do you have a &wt section in your input?
If no, you probably need it right after the first &end.
If you do, can you send the input file?

Carlos L. Simmerling, Ph.D.
Associate Professor Phone: (631) 632-1336
Center for Structural Biology Fax: (631) 632-1555
Stony Brook University Web:
Stony Brook, NY 11794-5115 E-mail:

Vincent Bisetty wrote:

>Dear Carlos,
>Thanks for your message. Using the input files from my last message, I
>executed (in amber8)-the job ran, but my tmp.out was a blank
>file. Iam not sure why? Please help...
>Heres the other sander input file:
>cd /usr/people/vincent/disk2/vin/cage03
>/usr/local/amber8/exe/sander \
>-O -i -c 1000.crd -p -o tmp.out -r 1000.rst
>Dr K Bisetty
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