AMBER Archive (2004)

Subject: AMBER: Phosphoserine

From: Venkata S Koppuravuri (kvsuneel_at_linus.bmb.wright.edu)
Date: Mon Oct 04 2004 - 14:26:28 CDT

Hi All,

Does anybody know what each column is (file format) of gaff.dat file in
amber7 ?

The format looks similar to frcmod file of amber is it correct??

The reason for asking all this is I am trying to build prep and frcmod for
Phosphoserine and I dont have some of the required parameters. if both the
files are of the same format can I copy directly some of the parameters
for writing my FRCMOD file ??

Also I need to have one of the oxygens on the phosphorous to be -vely
charged what type of oxygen do I need to use for this and how do I get
the parameters for this

Thanks in Advance
-Venkat

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