AMBER Archive (2004)

Subject: Re: AMBER: Atom distance

From: Thomas E. Cheatham, III (cheatham_at_chpc.utah.edu)
Date: Mon Sep 27 2004 - 15:48:11 CDT

> trajin model1-3-md1.crd
> distance first out model1-3-md1-dist1.dist 84_at_ND2 197_at_O time 0.1
> strip :WAT
> go

This is not a proper atom selection, I assume you want residue 84?

distance out model1-3-md1-dist1.dist time 0.1 :84_at_ND2 :197_at_O

The command summary should print out a summary stating what atoms were
picked. If it does not, increase the verbosity level (prnlev 3).

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