AMBER Archive (2004)

Subject: Re: AMBER: radius of gyration

From: Marsita M (
Date: Sun Sep 26 2004 - 01:40:24 CDT

thank you for responding to my post,

i have managed to install carnal, however, when i tried to run it, it gives
this error message:

analin: No such file or directory

and i tried to find analin in the src file, but its not there, is it the
same as anal?
i tried to install anal too but i failed. here's the error:


make[1]: Leaving directory `/usr/local/amber8/src/lib'
ifort -o anal anafil.o analgr.o analys.o angl.o anglp.o atmget.o
bangle.o bond.o bpgen.o calhb.o calhx.o calpuc.o chain.o clear.o compact.o
dihtel.o dist.o egout.o egrout.o ephi.o gaus80.o gauss.o getall.o getcmn.o
hangl.o haxis.o hbond.o hbout.o helix.o locmem.o lsqstr.o matind.o mdbox.o
mdread.o minv.o movecm.o nhbpar.o pdbout.o pdbrit.o percon.o prtri.o
prtrin.o puck.o pucker.o radgy.o rdparm.o rdrest.o resdis.o resnbn.o
resnbp.o rms.o rmsfit.o rmsmov.o stell.o stogrd.o sumgrp.o teldih.o telint.o
tell.o tilang.o tilt.o tors.o traco.o vect.o volume.o xconst.o
../lib/rfree.o ../lib/rgroup.o ../lib/nxtsec.o ../lib/util.o ../lib/amopen.o
../lib/mexit.o ../lib/ligenb.o ../lib/sys.a -L/usr/local/mpich-
/usr/bin/ld: cannot find -lmpich
make: *** [anal] Error 1

please help


>From: "Sanjeev B.S." <>
>Subject: Re: AMBER: radius of gyration
>Date: Sun, 26 Sep 2004 08:58:32 +0530 (IST)
> > i'm using amber8 and i cant use carnal because it produced conflicts in
> > reading the prmtop file.
>"Carnal exists but is unsupported in Amber8.
>You can manually make it via
>cd src/carnal
>make install
>The documentation is doc/carnal.pdf
>Scott Brozell"
>The AMBER Mail Reflector
>To post, send mail to
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