AMBER Archive (2004)

Subject: Re: AMBER: Parameters for Inosine

From: Jiri Sponer (sponer_at_ncbr.chemi.muni.cz)
Date: Fri Sep 24 2004 - 15:02:59 CDT

> Dear Ambers,
> I'd like to find out if there are standard parameter data for Inosine anywhere before I try to parametrize all by myself.
> Thanks a million,
> Yuqin
>
>
Dear Yugin,

Labs. of Filip Lankas and Nada Spackova have parameters for inosine,
which were used for duplexes in a Biophys J. paper in 2002,
for G-DNA in Biophys. J. 2001 paper,
Orozco's lab also has parameters (JACS 2001 paper, if I remember
properly).
Some contacts:
spackova_at_ncbr.chemi.muni.cz
filip.lankas_at_epfl.ch

all the best Jiri

-------------------------------------------------------
Jiri Sponer
Institute of Biophysics
Academy of Sciences of the Czech Republic
Kralovopolska 135
CZ-61265 Brno
Czech Republic
e-mail: sponer_at_ncbr.chemi.muni.cz
fax: 420 5412 12179
phone: 420 5415 17133
http://www.ibp.cz/labs/LSDNA/
http://ncbr.chemi.muni.cz
Senior Wellcome Trust International Research Fellow for Biomedical Science
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