AMBER Archive (2004)

Subject: AMBER: Amber 8 installation error on Xeon 2-CPU

From: Kei ODAI (keiodai_at_shohoku.ac.jp)
Date: Thu Sep 23 2004 - 18:11:15 CDT

Dear all

I can not install amber8 on my 2-cpu(Xeon) PC.
I did the following.

====================== [environment] ==========================
redhat linux enterprise3.0
ifort (ver 8.1)
MKL70
Xeon 2CPU

========================= [Display] ==========================

$ MKL_HOME=/opt/intel/mkl70

$ ./configure ifort

$ make serial
Starting installation of Amber8 (serial) at Thu Sep 23 11:24:02 JST 2004.
mkdir ../exe

......

make[2]: Leaving directory `/usr/local/amber8/src/lmod'
ifort -FR -o sander trace.o lmod.o decomp.o icosasurf.o egb.o findmask.o pb_force.o sander.o cshf.o noecalc.o noeread.o caldis.o calrate.o dinten.o drates.o indexn.o kmat.o pearsn.o plane.o remarc.o nmrcal.o nmrred.o restal.o getnat.o nmrnrg.o modwt.o disnrg.o angnrg.o tornrg.o nmrprt.o nmrgrp.o nmrcms.o nmrcmf.o impnum.o nmrsht.o at2res.o chklin.o opnmrg.o printe.o runmin.o ndvprt.o force.o rdparm.o mdread.o locmem.o runmd.o getcor.o r6ave.o r6drv.o aveint.o degcnt.o corf.o threeb.o tripl.o nmrrad.o decnvh.o fastwt.o echoin.o parallel.o jnrg.o shake.o ene.o mdwrit.o minrit.o set.o setmm.o dynlib.o mdfil.o nmlsrc.o ew_force.o ew_setup.o ew_box.o ew_bspline.o ew_fft.o ew_direct.o ew_recip.o pcshift.o align.o rstack.o istack.o rfree.o rgroup.o random.o lsqfit.o amopen.o debug.o ew_recip_reg.o ew_handle_dips.o ew_dipole_recip.o mexit.o new_time.o extra_pts.o thermo_int.o matinv.o assert.o mmtsb.o mmtsb_client.o erfcfun.o veclib.o mdm.o pb_init.o constantph.o prn_dipoles.o \
        ../lmod/lmod.a \
        ../lapack/lapack.a ../blas/blas.a ../lib/nxtsec.o ../lib/sys.a
ld: BFD 2.14.90.0.4 20030523 internal error, aborting at ../../bfd/elfcode.h line 226 in bfd_elf64_swap_symbol_in

ld: Please report this bug.

make[1]: *** [sander] Error 1
make[1]: Leaving directory `/usr/local/amber8/src/sander'
make: *** [serial] Error 2
=====================================================================

Can you help me? please.
Thank you very much in advance for your help.

Sincerely,

Kei Odai

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