AMBER Archive (2004)

Subject: RE: AMBER: Compilation Problem in Amber 7

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Mon Sep 13 2004 - 23:05:35 CDT

Dear Stephen,

Have you tried getting hold of the latest version of G77 for suse? It is
possible that it is indeed an compiler bug as indicated by the error
message. What version of g77 do you currently have installed? Run the system
update program and get the latest version and try again.

All the best
Ross

/\
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|\oss Walker

| Department of Molecular Biology TPC15 |
| The Scripps Research Institute |
| Tel:- +1 858 784 8889 | EMail:- ross_at_rosswalker.co.uk |
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> -----Original Message-----
> From: owner-amber_at_scripps.edu
> [mailto:owner-amber_at_scripps.edu] On Behalf Of Stephen P. Molnar, Ph.D.
> Sent: 13 September 2004 08:54
> To: amber_at_scripps.edu
> Subject: AMBER: Compilation Problem in Amber 7
>
> I have encountered in my attempt to install Amber 7 on my
> upgraded SuSE linux machine. The compilation process worked in an
> earlier version.
>
> The error message sequence is:
>
> cd gibbs; make install
> make[1]: Entering directory `/home/computation/amber7/src/gibbs'
> ../Compile L1 -P -DNOEWALD gib.f
> cat gib.f | cpp -traditional -P -DNOEWALD -DLinux > _gib_.f
> g77 -c -O3 -fno-globals -ff90 -funix-intrinsics-hide _gib_.f
> ../Compile L0 -P -DNOEWALD mdread.f
> cat mdread.f | cpp -traditional -P -DNOEWALD -DLinux >
> _mdread_.f
> g77 -c -g -fno-globals -ff90 -funix-intrinsics-hide _mdread_.f
> ../Compile L1 -P -DNOEWALD runmd.f
> cat runmd.f | cpp -traditional -P -DNOEWALD -DLinux >
> _runmd_.f
> g77 -c -O3 -fno-globals -ff90 -funix-intrinsics-hide _runmd_.f
> ../Compile L2 -P -DNOEWALD force.f
> cat force.f | cpp -traditional -P -DNOEWALD -DLinux >
> _force_.f
> g77 -c -O3 -fno-globals -ff90 -funix-intrinsics-hide _force_.f
> ../Compile L2 -P -DNOEWALD nnbond.f
> cat nnbond.f | cpp -traditional -P -DNOEWALD -DLinux >
> _nnbond_.f
> g77 -c -O3 -fno-globals -ff90 -funix-intrinsics-hide _nnbond_.f
> ../Compile L1 -P -DNOEWALD giba.f
> cat giba.f | cpp -traditional -P -DNOEWALD -DLinux
> > _giba_.f
> g77 -c -O3 -fno-globals -ff90 -funix-intrinsics-hide _giba_.f
> ../Compile L2 -P -DNOEWALD gibb.f
> cat gibb.f | cpp -traditional -P -DNOEWALD -DLinux
> > _gibb_.f
> g77 -c -O3 -fno-globals -ff90 -funix-intrinsics-hide _gibb_.f
> ../Compile L2 -P -DNOEWALD gibb2.f
> cat gibb2.f | cpp -traditional -P -DNOEWALD -DLinux >
> _gibb2_.f
> g77 -c -O3 -fno-globals -ff90 -funix-intrinsics-hide _gibb2_.f
> ../Compile L2 -P -DNOEWALD decnvh.f
> cat decnvh.f | cpp -traditional -P -DNOEWALD -DLinux >
> _decnvh_.f
> g77 -c -O3 -fno-globals -ff90 -funix-intrinsics-hide _decnvh_.f
> ../Compile L2 -P -DNOEWALD micst.f
> cat micst.f | cpp -traditional -P -DNOEWALD -DLinux >
> _micst_.f
> g77 -c -O3 -fno-globals -ff90 -funix-intrinsics-hide _micst_.f
> ../Compile L2 -P -DNOEWALD misc.f
> cat misc.f | cpp -traditional -P -DNOEWALD -DLinux
> > _misc_.f
> g77 -c -O3 -fno-globals -ff90 -funix-intrinsics-hide _misc_.f
> ../Compile L3 -P -DNOEWALD machinedep.f
> cat machinedep.f | cpp -traditional -P -DNOEWALD -DLinux >
> _machinedep_.f
> g77 -c -O3 -fno-globals -ff90 -funix-intrinsics-hide _machinedep_.f
> ../Compile L2 -P -DNOEWALD nmr_strip.f
> cat nmr_strip.f | cpp -traditional -P -DNOEWALD -DLinux >
> _nmr_strip_.f
> g77 -c -O3 -fno-globals -ff90 -funix-intrinsics-hide _nmr_strip_.f
> ../Compile L1 -P -DNOEWALD slwadj.f
> cat slwadj.f | cpp -traditional -P -DNOEWALD -DLinux >
> _slwadj_.f
> g77 -c -O3 -fno-globals -ff90 -funix-intrinsics-hide _slwadj_.f
> ../Compile L1 -P -DNOEWALD veloc.f
> cat veloc.f | cpp -traditional -P -DNOEWALD -DLinux >
> _veloc_.f
> g77 -c -O3 -fno-globals -ff90 -funix-intrinsics-hide _veloc_.f
> ../Compile L2 -P -DNOEWALD torcon.f
> cat torcon.f | cpp -traditional -P -DNOEWALD -DLinux >
> _torcon_.f
> g77 -c -O3 -fno-globals -ff90 -funix-intrinsics-hide _torcon_.f
> ../Compile L2 -P -DNOEWALD rstin.f
> cat rstin.f | cpp -traditional -P -DNOEWALD -DLinux >
> _rstin_.f
> g77 -c -O3 -fno-globals -ff90 -funix-intrinsics-hide _rstin_.f
> ../Compile L2 -P -DNOEWALD connrg.f
> cat connrg.f | cpp -traditional -P -DNOEWALD -DLinux >
> _connrg_.f
> g77 -c -O3 -fno-globals -ff90 -funix-intrinsics-hide _connrg_.f
> _connrg_.f: In subroutine `torccs':
> _connrg_.f:852: internal compiler error: in get_loop_body, at
> cfgloop.c:1026
> Please submit a full bug report,
> with preprocessed source if appropriate.
> See <URL:http://www.suse.de/feedback> for instructions.
> make[1]: *** [connrg.o] Error 1
> make[1]: Leaving directory `/home/computation/amber7/src/gibbs'
> make: *** [install] Error 2
>
> Thanks in advance
>
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