AMBER Archive (2004)

Subject: Re: AMBER: snapshots of MD trajectory

From: Peter Gannett (pgannett_at_hsc.wvu.edu)
Date: Fri Aug 27 2004 - 10:43:33 CDT

Xin

Moilview can do both. See

http://morita.chem.sunysb.edu/~carlos/moil-view.html

Pete

>>> hux_at_mail.rockefeller.edu 8/27/2004 11:23:08 AM >>>
Hello,
I have a question about the analysis of MD trajectory from Amber 8. How
can I extract all the snapshots (such as save as PDB file) from the MD
trajectory, and generally, is there a way to cluster these ensembles of
MD snapshot?

Thank you very much for your help.

Xin 

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