AMBER Archive (2004)

Subject: Re: AMBER: Moil-view, prmtop, inpcrd question

From: Carlos Simmerling (carlos_at_ilion.bio.sunysb.edu)
Date: Sat Aug 14 2004 - 07:13:23 CDT

can you send the text that moil-view writes to the shell window?
send the error message line(s) and at least a dozen of the lines it
writes before that.
carlos

===================================================================
Carlos L. Simmerling, Ph.D.
Assistant Professor Phone: (631) 632-1336
Center for Structural Biology Fax: (631) 632-1555
Stony Brook University Web: http://comp.chem.sunysb.edu/carlos
Stony Brook, NY 11794-5115 E-mail: carlos.simmerling_at_stonybrook.edu
===================================================================

opitz_at_che.udel.edu wrote:

>Dear Amber Community,
>
>I am trying to load a molecule in moil-view10 using a prmtop and inpcrd
>file generated by xleap.
>At first I load the coordinate file. When it prompts to use connectivity
>files I choose yes and load my prmtop file. At this point the warning:
>CRD/CON mistmatch in #atom
>appears.
>I checked the inpcrd and prmtop files and they seemed fine. I don't know
>if this is a moil-view problem, and I don't know how I would fix it (if
>the problem lies here, I would greatly appreciate very detailed help).
>I have attached the two files in question.
>
>Thanks,
>
>Armin
>
>
>
>
>
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