AMBER Archive (2004)

Subject: AMBER: ptraj -- velocities set to zero?

From: Gabbar Daaku (
Date: Thu Aug 12 2004 - 10:53:04 CDT

Assume the following situation: There are two
conformations (in restart format) of the same protein
in water box system. If I use conformation A to 'rms
reference mass :1-<last protein residue>' to
conformation B. Why are all velocites zero?

Do you Yahoo!?
Read only the mail you want - Yahoo! Mail SpamGuard.
The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to