AMBER Archive (2004)

Subject: AMBER: ptraj -- velocities set to zero?

From: Gabbar Daaku (gabbarsinghdaaku_at_yahoo.com)
Date: Thu Aug 12 2004 - 10:53:04 CDT

Assume the following situation: There are two
conformations (in restart format) of the same protein
in water box system. If I use conformation A to 'rms
reference mass :1-<last protein residue>' to
conformation B. Why are all velocites zero?

                
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