AMBER Archive (2004)

Subject: AMBER: unknown residue: ABA

From: Guowen Han (hgw2000_at_yahoo.com)
Date: Tue Aug 10 2004 - 13:31:25 CDT

I have error messages as follow:

> mol=loadpdb 3hvp.pdb
Loading PDB file: ./3hvp.pdb
Unknown residue: ABA number: 66 type: Nonterminal
Unknown residue: ABA number: 94 type: Nonterminal
Creating new UNIT for residue: ABA sequence: 67
One sided connection. Residue: missing connect0 atom.
Created a new atom named: N within residue: .R<ABA 67>
Created a new atom named: CA within residue: .R<ABA
67>
Created a new atom named: C within residue: .R<ABA 67>
Created a new atom named: O within residue: .R<ABA 67>
Created a new atom named: CB within residue: .R<ABA
67>
Created a new atom named: CG within residue: .R<ABA
67>
One sided connection. Residue: missing connect1 atom.
Creating new UNIT for residue: ABA sequence: 95
One sided connection. Residue: missing connect0 atom.
Created a new atom named: N within residue: .R<ABA 95>
Created a new atom named: CA within residue: .R<ABA
95>
Created a new atom named: C within residue: .R<ABA 95>
Created a new atom named: O within residue: .R<ABA 95>
Created a new atom named: CB within residue: .R<ABA
95>
Created a new atom named: CG within residue: .R<ABA
95>
One sided connection. Residue: missing connect1 atom.
  total atoms in file: 758
  Leap added 791 missing atoms according to residue
templates:
       791 H / lone pairs
  The file contained 12 atoms not in residue templates

Please help!

Lao_3

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