AMBER Archive (2004)

Subject: AMBER: RMSD result from GB model

From: Yongzhi Chen (yongzhi_mms_at_yahoo.com)
Date: Wed Aug 04 2004 - 12:35:03 CDT

Dear Amber users/developers,

I want to make sure if RMSD of 9.7 (fit) in a 2 ns GB
MD is necessarily a problem. The protein consists of 3
domains, 1278 residues. The ID is 3BTA. In the input
file, I assigned igb=5.

Any suggestion will be appreciate.

Best,
Yongzhi

                
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