AMBER Archive (2004)

Subject: AMBER: sander tutorial

From: mathew k varghese (mathew_kvarghese_at_yahoo.co.in)
Date: Thu Jul 22 2004 - 07:16:33 CDT

HI,
 
I am new to AMBER.
Now I am working with the tutorial.
While using the sander tutorial, I am getting an error message with certain input files given in the tutorial itself.
The error message is
 
variable not in name list
 
When I edited the input files the sander works.
The variables not included in the $cntrl namelist are
 
init, ndfmin, tauts, npscal, nrun, ntt,
In the amber manual these variables are included in the gibbs module.
Can anybody help?
 
I am working with a P4 pc with RedHat9 .
Is it possible to run amber on a pc?

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