AMBER Archive (2004)

Subject: AMBER: Protein MD

From: yen li (chem_me2000_at_yahoo.com)
Date: Sat Jul 03 2004 - 11:04:59 CDT

Hi Amber,
I want to do the Implicit MD simulations on a protein sampling the loop regions more than the secondary structures. For this is putting restraints on the helices & sheets a good idea, and if it is so how much restraint should I put so as to make it a realistic simulation.
Thanks.

                
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