AMBER Archive (2004)

Subject: Re: AMBER: Angle Restraining

From: David A. Case (case_at_scripps.edu)
Date: Fri Apr 30 2004 - 10:39:27 CDT


On Fri, Apr 30, 2004, Pooja Narang wrote:

> I want to know that how can we do angle restraining of main chain angles
> (ie N-CA-C, CA-C-N, C-N-CA) in the protein backbone during minimization in
> the same way as the dihedral restraining can be performed.

Please see the section 5.9 of the Amber manual, especially the
variable IAT. Page 119 of the Amber8 manual, p. 112 of the Amber7 manual.

...dac
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