AMBER Archive (2004)

Subject: AMBER: NMODE

From: xiaowei li (xl3a_at_virginia.edu)
Date: Fri Apr 09 2004 - 15:20:23 CDT


Hi, I am using NMODE to calculate the frequencies of DNA with 12 Base
Pairs in vacuo. My computer has two 1.53 GHz AMD Athlon K7 MP processors
  with 256KB of cache (per cpu) and 1 GB of RAM. First, I tried to
minimize the energy by set nrun=4. However, after one week (168 hrs),
  the job is still not finished. I want to know generally how long it
  will take to finish evergy minization by nmode for 12 base pairs DNA in
  vacuo . And how long does it take to get the frequencies after energy
  minization. Thank you in advance

-- 
Xiaowei Li
Department of Electrical and Computer Engineering
University of Virginia
924-3446(O)

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