AMBER Archive (2004)

Subject: AMBER: question about image

From: Youyi Peng (pengyo_at_UMDNJ.EDU)
Date: Fri Apr 02 2004 - 16:41:36 CST

Dear Amber users,
I have a general question about imaging. After MD simulation in PBC, what
kind of problems will be generated if no ptraj/image post-processing? What
difference will be made before and after imaging? I compared RMSD of
trajectory files before and after, and it looks no difference. Does imaging
affect the fitting and averaging of structures? I don't really understand
what imaging does and what kind of effects it will have.
Any comments are appreciated.
Youyi Peng
Graduate Student
Department of Pharmacology
675 Hoes Lane,
Piscataway, NJ 08854
Phone: (732) 235 0181
Fax: (732) 235 3474


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