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AMBER Archive (2004)Subject: AMBER: Errors when running tleap
From: Ann P (anita_pachai_at_rediffmail.com)
Hi
I ran tleap and i got the following errors and warnings can somebody help me in getting rid of them
I had 3 bond statements in my leap.in file.Are the following errors
bond: Argument #1 is type String must be of type: [atom]
usage: bond <atom1> <atom2> [order]
bond: Argument #1 is type String must be of type: [atom]
usage: bond <atom1> <atom2> [order]
bond: Argument #1 is type String must be of type: [atom]
usage: bond <atom1> <atom2> [order]
Checking Unit.
What are the numbers in the following warnings...
R<ASP 10185>.A<C 11> and .R<ASN 10186>.A<N 1>
WARNING: There is a bond of 9.712116 angstroms between:
------- .R<ASP 10185>.A<C 11> and .R<ASN 10186>.A<N 1>
WARNING: There is a bond of 11.046611 angstroms between:
------- .R<TYR 20383>.A<C 20> and .R<ILE 20384>.A<N 1>
WARNING: The unperturbed charge of the unit: -10.000000 is not zero
Thanx in advance
Ann
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