AMBER Archive (2004)

Subject: Re: AMBER: How to add ACE and NME groups?

From: David A. Case (case_at_scripps.edu)
Date: Mon Feb 23 2004 - 10:47:05 CST

On Mon, Feb 23, 2004, Ma?gorzata Jaro?czyk wrote:

> I work with protein model without loops and terminals and I want to add
> protecting groups to head and tail of the helices. How can I do this in the
> Xleap program?

Please see page 21 of the Users' Manual.

 What is the difference between the two protecting groups NMe and NHE?

Use the "edit" or "desc" commands in LEaP to find out these units are.

...dac 

-- 

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David A. Case                     |  e-mail:      case_at_scripps.edu
Dept. of Molecular Biology, TPC15 |  fax:          +1-858-784-8896
The Scripps Research Institute    |  phone:        +1-858-784-9768
10550 N. Torrey Pines Rd.         |  home page:                   
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