AMBER Archive (2004)

Subject: Re: AMBER: Run calculations for protein in Amber-distance dependent dielectric function

From: Vlad Cojocaru (Vlad.Cojocaru_at_mpi-bpc.mpg.de)
Date: Thu Feb 12 2004 - 08:34:31 CST

yes if you want distance dependent dielectric
but you should use that within the &ewald name list.
vlad

Małgorzata Jarończyk wrote:

> I use Amber v. 7.0, and I found in manual that I should use commands:
> dielc=4, idiel=0,
> but should I use also in the input line the command
> eedmeth=5
> to have distance dependent dielectric function?
>
> Malgorzata Jaronczyk 

-- 
Vlad Cojocaru 
Max Planck Institute for Biophysical Chemistry 
Department: 060 
Am Fassberg 11, 37077 Goettingen, Germany 
tel: ++49-551-201.1327 
e-mail: Vlad.Cojocaru_at_mpi-bpc.mpg.de
home tel: ++49-551-9963204  

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu