AMBER Archive (2004)

Subject: Re: AMBER: How to remove Cl- ions

From: Vlad Cojocaru (Vlad.Cojocaru_at_mpi-bpc.mpg.de)
Date: Fri Feb 06 2004 - 05:09:52 CST

Hi,
 Make a pdb (ampdb) and then delete them...load the new pdb in leap and
save a new top and crd.
That's the way how I would do it...
Vlad

Do Anh Tuan wrote:

> hello,
> Can anybody help me to remove Cl- ions from prmtop file and crd file?
> Thank you so much,
>
> D.A.T
>
>
>
> Laboratory of Molecular Biotechnology - Collaborative Bioinformatics Lab.
> University of Natural Sciences
> Vietnam National University - Ho Chi Minh City
> 227 Nguyen Van Cu St., Dist. 5, HCM City, Vietnam
>
>
>
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-- 
Vlad Cojocaru 
Max Planck Institute for Biophysical Chemistry 
Department: 060 
Am Fassberg 11, 37077 Goettingen, Germany 
tel: ++49-551-201.1327 
e-mail: Vlad.Cojocaru_at_mpi-bpc.mpg.de
home tel: ++49-551-9963204  

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