AMBER Archive (2003)

Subject: AMBER: Amber - compiler help

From: Malone, Scott (Scott.Malone_at_stjude.org)
Date: Thu Dec 04 2003 - 16:11:53 CST

Greeting,
        I'm new to running amber and I'm look for some input from people on compilers and compiler options that people find to give the performance for amber7. We are currently running amber on Linux cluster of IBM BladeServers, each with 2.5 Gb of Memory, 2.4 Ghz Zeon Processors, and GigE interconnect. Each blade is currently running RedHat 7.3 with Kernel 2.4.18-27.7.xsmp. We have both gnu3.1 and Porland 4.1 compilers (we have pgi5.0, but not installed yet.). Of course recommendation on other compilers would helpful as well..

Also, any thoughts on amber8 and compilers would also be helpful....

Your thoughts on this would be of great help and thanks in advance!

Scott Malone
Systems Integration Engineer
Hartwell Center for Bioinformatics and Biotechnology
scott.malone_at_stjude.org
901.495.5957

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