AMBER Archive (2003)

Subject: Re: AMBER: Pseudouridine force field parameters

From: Peter Gannett (pgannett_at_hsc.wvu.edu)
Date: Tue Dec 02 2003 - 06:45:01 CST

Pascal:

Many thanks for the information. I don't have much experience with RNA and any information on the subject is very helpful.

Pete

>>> P.Auffinger_at_ibmc.u-strasbg.fr 11/30/03 10:58AM >>>
Pete,

They are several publications of our group that deal with pseudouridines.
See for example :
JMB 1997 269 326 (contains charges)
Biophys 1999 76 50
and a review " Effects of pseudourydilation on tRNA hydration and dynamics :
a theoretical approach" 1998. (the pdf is available at
http://www-ibmc.u-strasbg.fr/upr9002/westhof/biblio_pascal.html)

best,

pascal

> All:
>
> Does anyone have a set of force field parameters for psuedouridine? Or,
> can someone point me to where I might find them? I admit I have not
> searched long and hard but a cursory search did not turn up much useful.
> Thanks.
>
> Pete Gannett
>
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________________________
pascal auffinger
ibmc-cnrs
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http://www-ibmc.u-strasbg.fr/upr9002/westhof/biblio_pascal.html
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