AMBER Archive (2003)

Subject: Re: AMBER: Re: Nmode problem

From: Holger Gohlke (gohlke_at_bioinformatik.uni-frankfurt.de)
Date: Mon Dec 01 2003 - 08:17:37 CST

Wu Yingliang schrieb:
>
> Dear Dr. Holger Gohlke,
>
> Thanks a lot for your kind help!
>
> Here, since I am not a experienced AMBER user, would you like to tell me how to recompile and reinstall nmode individually without changing other AMBER7.0 modules?

Change directory to $AMBERHOME/src/nmode and type "make nmode" there.
This should give you an executable for nmode that you can copy/move to
your exe or bin directory (probably $AMBERHOME/exe (?)).

Best regards

Holger

>
> Looking forward to your help once more!
>
> Thank you very much in advance!
>
> Best wishes,
>
> Wu Yingliang
>
>
>
> >------------------------------------------------------------------
> >Hi,
> >
> >you need to increase the parameter MAXMEMX in sizes.h in
> >$AMBERHOME/src/nmode (at least) to the value given below:
> >
> >> Total memory required : 20855890 real words
> >
> >Then recompile and reinstall nmode. This should alleviate the problems
> >with nmode.
> >
> >With respect to the "Illegal character in prototype ..." messages: this
> >is due to new rules as to define function prototypes in perl versions
> >higher than 5. The only workaround I know here is to run mm_pbsa with a
> >perl version that starts with "5....".
> >
> >Best regards
> >
> >Holger
> >
>
>
> ¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡Wu Yingliang
> ¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡wuyliang_at_public.wh.hb.cn
> ¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡¡2003-12-01
>
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-- 
++++++++++++++++++++++++++++++++++++++++++++++++++
Dr. Holger Gohlke

J.W. Goethe-Universität
Fachbereich Biologie und Informatik
Institut für Mikrobiologie	
Marie-Curie-Str. 9              
60439 Frankfurt/Main            
Germany                         

Tel.:  (+49) 69-798-29503; Fax: (+49) 69-798-29826
Email: gohlke_at_bioinformatik.uni-frankfurt.de
URL:   http://www.rz.uni-frankfurt.de/~hgohlke
++++++++++++++++++++++++++++++++++++++++++++++++++

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