AMBER Archive (2003)

Subject: AMBER: Protein Rotation

From: Frederico.Miranda_at_ibmb.uib.no
Date: Tue Nov 11 2003 - 06:47:44 CST

Hye, I made a MD simulation for a protein, and used carnal to determine RMS
for each residue, but my protein is rotating during the MD, so I have a great
discrepancy in the values. Is there a way that I could remove the effect of
the rotation when doing the calculation?

Thank you.

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