AMBER Archive (2003)

Subject: Re: AMBER: how to measure the minor groove widths of a DNA?

From: Peter Gannett (pgannett_at_hsc.wvu.edu)
Date: Tue Oct 28 2003 - 13:43:22 CST

You might try CURVES.

http://www.ibpc.fr/UPR9080/Curindex.html

Pete

>>> zhaoxc_at_puccini.che.pitt.edu 10/28/03 12:16PM >>>

Hi, Dear Amber users,

I am running a testing job for a DNA in water. I want to compare my
results with a literature figure about the minor groove widths along the
base pairs, can any one give me some hint on what to measure ? (I am going
to use Carnal)

I am not a bio people and new to the AMBER.

Thanks 

-- 

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