AMBER Archive (2003)

Subject: Re: AMBER: problem with pdb files

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• Maybe in reply to: Mithun Mitra: "AMBER: problem with pdb files"
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> you can test it by taking a pdb (from the data
> base) file and load it into leap ..then save topology and crd file and
> transform them into pdb file with ambpdb (with -aatm option)...then you
> will get a tipical Amber pdb file and then you can compare it with your file.

Another way to see pdb that leap can read is to

> savepdb DG dg.pdb

for any residue.

Bill Ross

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• Next message: kbyun_at_wesleyan.edu: "AMBER: mm_pbsa crg file"
• Previous message: Martin Lepsik: "AMBER: Reverse TI run"
• Maybe in reply to: Mithun Mitra: "AMBER: problem with pdb files"
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