AMBER Archive (2003)

Subject: Re: AMBER: C-alpha RMS

From: Kun Song (cmmpimento_at_yahoo.com)
Date: Mon Sep 22 2003 - 08:45:20 CDT

you can use ptraj or carnal. there are scripts in the manual.

Do Anh Tuan <datuan_at_hcmuns.edu.vn> wrote:Dear Amber users
I am a new Amber user and running MD simulation for a protein (259 residues).
But I don't know how to create C-alpha RMSD report to analyze the output
results (ex: crd file). Can anybody help me on this?
Thanks in advance,

Do Anh Tuan

----------
Collaborative Bioinformatics Lab.
Laboratory of Molecular Biotechnology
University of Natural Sciences, VNU - HCMC
Add: 227 Nguyen Van Cu St., Dist. 5, HCMC, Vietnam
e-mail: datuan_at_hcmuns.edu.vn

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