AMBER Archive (2003)

Subject: AMBER: double bonds in prmtop

From: Herbert Georg (hcgeorg_at_if.usp.br)
Date: Fri Sep 19 2003 - 15:09:16 CDT

I would like to know how does AMBER treat double bonds. How does it know
if a bond is a single or doube or even a triple one? Does it use the
bond lenght given, by PDB file for example, as R0 or it uses the lenght
given by literature?

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