AMBER Archive (2003)

Subject: AMBER: sander on cygwin

From: Lee, Matthew (mrlee_at_amgen.com)
Date: Mon Sep 15 2003 - 13:14:40 CDT

I am running CYGWIN_NT-5.0 under Windows 2000 and compiled AMBER7 without
error, but I can't get sander to run. All other modules of AMBER work and
pass all the tests in the $AMBERHOME/test directory.

When I try to execute sander, I get no STDOUT or STDERR and no output files
of any type are created, not even mdout.
----------------------------------
cygwin9% ls
cygwin10% sander
cygwin11% ls
cygwin12% gibbs
open: No such file or directory
apparent state: unit 5 named PIN
lately writing direct unformatted external IO
Aborted (core dumped)
cygwin13% ls
gibbs.exe.stackdump*
cygwin14%
----------------------------------
Does anyone have any ideas on how I can get sander to work in this
environment? If so, please e-mail me as well as the reflector, because I am
unable to receive reflector mail and must go to the Jarrod Smith's archive
in order to read it.

--Matt Lee
p.s. I saved the output of the sander compilation and didn't notice anything
unusual, but can send it to someone if it will help.

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