AMBER Archive (2003)

Subject: AMBER: temperature problem

From: Lishan Yao (yaolisha_at_pilot.msu.edu)
Date: Mon Aug 25 2003 - 08:37:01 CDT

Hi there:
   I have run a long time MD for my protein in water by using sander. I
am just curious to know what is the temperature of the protein and what
is the temperture of water. So could I find a way to calculate them. I
have a trajectory file and an energy output and a standard output file.
Thanks in advance for your help.

Best,
Lishan 

-- 
Lishan Yao <yaolisha_at_pilot.msu.edu>
MSU

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