AMBER Archive (2003)

Subject: Re: AMBER: ANAL component

From: David A. Case (case_at_scripps.edu)
Date: Wed Aug 13 2003 - 17:45:36 CDT


On Wed, Aug 13, 2003, sd233_at_georgetown.edu wrote:
>
> I have a problem with ANAL. My PBC system contains approx 53000 atoms.
> ANAL is giving me a message indicating that it is unable to allocate
> appropriate memory. It says that it is allocating 0 bytes of memory.
> Am I over loading the buffer? I noticed in the source that memory for
> this activity is dynamically allocated. Is my system simply too large?
> too many atoms?
>

There was a report like this a short while ago, but no details were ever
provided....

What happens with the test cases? (cd amber7/test; make test.anal)?

What is the exact error message? What sort of machine are you on?

..thx...dac

-- 

================================================================== David A. Case | e-mail: case_at_scripps.edu Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896 The Scripps Research Institute | phone: +1-858-784-9768 10550 N. Torrey Pines Rd. | home page: La Jolla CA 92037 USA | http://www.scripps.edu/case ================================================================== ----------------------------------------------------------------------- The AMBER Mail Reflector To post, send mail to amber_at_scripps.edu To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu