AMBER Archive (2003)

Subject: Re: AMBER: secondary structure

From: Holger Gohlke (gohlke_at_scripps.edu)
Date: Wed Aug 13 2003 - 09:55:22 CDT

Yuguang Mu wrote:
>
> Dear All,
> DO you have some good suggestions about the programs to assign
> the secondary structures of peptides, proteins with known coordinates,
> such as, alpha, beta, turns, 3_10 helix ?

Have a look at the DSSP program by W. Kabsch & C. Sander
(http://www.cmbi.kun.nl/gv/dssp/).

Best regards

Holger

>
> Dr. Yuguang Mu
> Institute for Physical and Theoretical Chemistry
> J.W. Goethe University Frankfurt am Main
> Marie Curie Str. 11
> 60439 Frankfurt/Main, Germany
> Tel: +49-(0)69-798-29711
>
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-- 
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Dr. Holger Gohlke
Dept. of Molecular Biology, TPC15
The Scripps Research Institute
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La Jolla, CA 92037   USA
phone: +1-858-784-9788
fax:   +1-858-784-8896
email: gohlke_at_scripps.edu
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