AMBER Archive (2003)

Subject: AMBER: saveamberprep and saveoff in xLeap

From: Mi-Kyung Seo (mkseo98_at_hotmail.com)
Date: Fri Aug 08 2003 - 12:39:37 CDT

Thanks for the response.

I am not sure it is a warning or a fatal error.
It is ok when I save to off format but I need prep format for converting it
into my own format.
Is there any way to solve the following problem??

> > >saveamberprep unit myunit.prep
> >
> > saving prep, residue UNK
> > UNK: connect0 not defined
> > UNK: connect1 not defined
> > saving prep, residue UNK
> > UNK: connect0 not defined
> > UNK: connect1 not defined
> > -- Remember to delete unwanted IMPROPER terms!
>
>As far as I know, it is not required to have "connect" atoms defined; is
>the
>above just a warning or a fatal error? What happens if you save to off
>format (saveOff) instead?
>
>..good luck...dac
>
>--
>
>==================================================================
>David A. Case | e-mail: case_at_scripps.edu
>Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896
>The Scripps Research Institute | phone: +1-858-784-9768
>10550 N. Torrey Pines Rd. | home page:
>La Jolla CA 92037 USA | http://www.scripps.edu/case
>==================================================================
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