AMBER Archive (2003)

Subject: 1-4 vdw term in Glycam2000

From: yuann (yuann_at_bioinfo.ndhu.edu.tw)
Date: Sun Jun 22 2003 - 23:24:16 CDT

Dear ALL,
I notice that some of the dihedral parameters of Glycam2000
are for SCNB=1.0, and I doubt if they are consistent with
the default SCNB=2.0 used in general force fields parameters
like parm99. I'd like to realize if these parameters need
to be modified or not while applying in MM/MD calculations of
a DNA-drug(with saccharide groups) complex.
Thank you very much!

Best Regards,
sychen.