AMBER Archive (2003)

Subject: jarrod

From: Jarrod Wesley Barnes (jarb77_at_uga.edu)
Date: Thu Jun 12 2003 - 09:51:33 CDT

I was curious to know if one could calculate the solvent
acessible surface area for an atom or residue in a trajectory
file over the course of a MD simulation in one of the programs
associated with Amber. If not, is there a program that is
capable of doing this calculation over the course of the
trajectory ?

thanks,
Jarrod Barnes
Grad Student at UGA BIOCHEM
PI: Dr. Rob Woods