AMBER Archive (2003)

Subject: calculated b-factor higher than x-ray

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Dear Amber users,

I have gone through the Amber mailist archive, but I didn't find an answer for this question. Why generally the calculated B-factor from Amber trajectory is higher (in magnitude) than its crytallographic values? I took the trajectory files from sander output. If it is reasonable, could you cite me some publications about that?

Thanks,
Bimo
ITB - Stuttgart

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• Next message: salinthip thipayang: "which AMBER program to use to get the e-density output?"
• Previous message: David A. Case: "Re: vlimit exceeded when sander calculate free energies using TI"
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