AMBER Archive (2003)

Subject: Re: helix movement

From: Yuguang Mu (ygmu_at_theochem.uni-frankfurt.de)
Date: Tue Jun 10 2003 - 05:47:42 CDT

My rough idea is following :
get coordinates and velocities of the helix/domain
then calculate the exectly the overall translational and rotational
velocities. then you may have a idea of such movement.

Dr. Yuguang Mu
Institute for Physical and Theoretical Chemistry
J.W. Goethe University Frankfurt am Main
Marie Curie Str. 11
60439 Frankfurt/Main, Germany
Tel: +49-(0)69-798-29711

On Tue, 10 Jun 2003, Bimo Ario Tejo wrote:

> Dear Amber users,
>
> Does anyone have a tool to calculate the movement of helix and/or domain from Amber trajectory file? Superimposing some snapshots is useful, but it is not a quantitative way to describe such a movement.
>
> Any help is highly appreciated.
>
> Best regards,
> Bimo
> ITB - Stuttgart
> --
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