AMBER Archive (2003)

Subject: saving trajectory of solute only

From: Peter Anderson (toutvabien78_at_yahoo.com)
Date: Mon Jun 09 2003 - 11:01:53 CDT

Dear Amber Users,

If you're performing a molecular dynamics simulation
of a solvated molecule, is it possible to save the
trajectory coordinates of just the solute? If not,
can anyone suggest how visualizing the solute molecule
alone during the animation can be facilitated, given
the large screen space taken by the thousands of
solvent molecules (I use Visual Molecular Dynamics to
do my animations)?

Thank you very much,
Peter Anderson

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