AMBER Archive (2003)

Subject: a question about constructing a periodic box by PLEP.

From: Margaret Shun Cheung (mscheung_at_Glue.umd.edu)
Date: Tue May 20 2003 - 10:48:56 CDT

Dear Amber users,

I'm still using PLEP simply because it's a hard habit to break.
OK. Now the problem is the following:
I'd like to simulate my system under a periodic boundary condition.
However, I can't figure out how to define the volume or size of the
periodic box by using PLEP (another reason is because I'm too lazy to dig
through the manual. sorry for that). I was expecting if there is a quick
answer from the amber newsgroup. Thanks a ton!

Sincerely,

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Margaret S. Cheung, Ph. D. | Tel: (301)405-7568
Postdoctoral Fellow | Fax: (301)314-9404
IPST Room 2116 | mscheung_at_ipst.umd.edu
University of Maryland | http://glue.umd.edu/~mscheung
College Park, MD 20742-2431 |
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