AMBER Archive (2003)

Subject: a question about scale factor

From: Ye Mei (ymei_at_202.119.52.76)
Date: Sat May 10 2003 - 21:53:45 CDT

Hello£¬

        I have a question about vdw and electrostatic interactions. When I calculate the interactions between a peptide and an ion, of course they are not bonded together,the scale factor of 1/2 and 1/1.2 should be used separately in vdw and electrostatic interaction?

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Best regards!
Ye Mei
ymei_at_itcc.nju.edu.cn
2003-05-11