AMBER Archive (2003)

Subject: Re: GB/SA

From: Robert G. Endres (endresrg_at_ornl.gov)
Date: Wed Apr 30 2003 - 14:57:31 CDT

Hi AMBER users,
this is regarding energy minimization with the implicit solvent
model GB/SA:

Does anyone know when forces on atoms are calculated if there is
a term included that describes the change of surface w.r.t direction?
In other words is there a hydrophobic force in amber (depending on
derivatives of SA)?

Any comments are welcome.
Thanks,
Robert