AMBER Archive (2003)

Subject: Re: any one has references to parallelization aspects of AMBER

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Hi Satish,

The following references may be of use..I don't know
about any new papers..

J. Vincent and K.M. Merz, "A highly portable parallel
implementation of AMBER 4 using the Message Passing
Interface Standard", J. Comp. Chem. 16, 1420-1427
(1995).

Crowley, M.F., Darden, T., Cheatham, T. Deerfield II,
D.W.. 1997. Adventures in Improving the Scaling and
Accuracy of a Parallel Molecular Dynamics Program. J.
Supercomputing 11:255-278.

best wishes
Hari

 --- Satish Kumar <satishm_at_cdacindia.com> wrote: >
Hello All,
>
> please some one let me know where can i get
> journals,web links etc reg
> parallelization aspects of AMBER.
>
> i am studying scalabilty issues of AMBER code, and
> try to enhance it to run on
> huge clusters and SMPs.
>
> Thanx in advance
>
> Satish Kumar.Mummadi
> Bioinformatics,
> SECG,C-DAC, Pune.
>

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