AMBER Archive (2003)

Subject: how to restrain base pair

From: Shuang Ding (sd517_at_nyu.edu)
Date: Mon Apr 28 2003 - 13:59:58 CDT

Hi,
When I am running MD simulation of 11mer DNA at constant pressure, the two strands become apart. So I want to use restraint on Watson-Crick base pairs. How to make restraint on base pair?
Thank you very much.