AMBER Archive (2003)

Subject: Trying to understand parm99.dat

From: Sichun Yang (syang_at_physics.ucsd.edu)
Date: Tue Apr 08 2003 - 19:44:32 CDT


Dear All,

I am trying to understand how parm99.dat works.
For example, I have a dihedral N -CA-C -N. Then how does it call from the
file parm99.dat? To be specific, which line(s) in parm99.dat can be
applied to this dihedral N -CA-C -N? I only find X -C -CA-X can be
used for that, but it seems that it is not enough.
I hope I have made my question clear. Thank you for your explanation.

Thanks,
Sichun