AMBER Archive (2003)

Subject: Groups defenition

From: Javier Cuervo (jcuervo_at_sciences.sdsu.edu)
Date: Tue Apr 08 2003 - 15:31:27 CDT

Hi, I'm a new user of amber 7 and I have the following question:

There is a easy way to put in a group the residues of an interface between
to proteins?

The problem is that this residues are not contiguos in the secuence, and
it seems to me I have to specify explicitly ALL the residues in the
interface in one group, and again explictly every other residue that does
not belong to the interface in a second group.

A short example would be very helpfull

Thank you in Advance

Javier Cuervo
Graduate Student
Computational Sciences Program
San Diego State University