AMBER Archive (2003)

Subject: Hydrogen bond energy

From: Dr.K.Veluraja (kvraja_at_sancharnet.in)
Date: Thu Apr 03 2003 - 04:37:02 CST

Hi
        We are using Amber7 (Sander) for our energy minimization
calculation. Our interest is to study the substrate-protein interaction
which is dominated by mainly hydrogen bonds. But we do not know whether the
Amber7 version (Sander) takes care of the hydrogen bonds. If not, is there
anyway to incorporate hydrogen bonding interactions in the input data.

with regards
Dr. K. Veluraja