AMBER Archive (2003)

Subject: Re: waterbox

From: caldwell_at_heimdal.compchem.ucsf.edu
Date: Fri Mar 21 2003 - 16:31:07 CST

You need to be more specific: a) amber version? b) did LEaP complain about
anything? c) do you mean the water is "discontinuous"?

jim

On Fri, 21 Mar 2003, GUILLERMINA L ESTIU wrote:

> I am trying to build a waterbox for a protein that has 1586 residues (24220
> atoms)
> Whem I succeed in building it, it looks funny, with rectangles of water at the
> sides of the protein.
> Has anyone faced this problem before?
> There is no problem with a watercap
> Dr Guillermina Estiu
> Chemistry Department
> Pennsylvania State University
> PA 16802
> 

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