AMBER Archive (2003)

Subject: The gblambda parameter

From: Thomas Steinbrecher (thomas.steinbrecher_at_physchem.uni-freiburg.de)
Date: Thu Mar 13 2003 - 08:29:03 CST

Dear AMBER users,

I am trying to set up a generalized Born simulation in
amber7 using the parameters of Case&Tsui (ref 28 in the
manual)

The leap section of the manual (p.60) states that this
radii set (mbondi) should be used together with gblambda=1
in the sander input.

I could not find explanations of the gblambda parameter in
the sander manual or the archives. I presume the mbondi
radii can and should be used with igb=1.

Can someone explain what the gblambda parameter is?

Kind regards,

Thomas Steinbrecher