AMBER Archive (2003)

Subject: AMBER6 problem in Solaris 8

From: S.Swaminathan (swamy_at_www.cdfd.org.in)
Date: Fri Feb 21 2003 - 13:18:19 CST

Hi

We are having a running of AMBER6 on SGI (irix 6.5).
We wanted it to be installed on to our SUN server (Solaris 8)
and Compaq Alpha Server (True Unix).

In case of Solaris 8 :

I am running the process of amber installation, as given in INSTALL file.
I am repeatedly getting the following error :

============================================================================

LD_RUN_PATH=/usr/openwin/lib cc -o xaLeap -g -DMEMORY_DEBUG=0 -I.. -w -B
static -DSYSV -DSRV4 basics.o sysdepend.o stringExtra.o varArray.o
getline.o avl.o pdb_format.o pdb_read.o pdb_sprntf.o pdb_sscanf.o
pdb_write.o vector.o zMatrix.o sort.o bag.o hash.o dictionary.o database.o
nVector.o ring.o matrix.o fortran.o displayer.o assoc.o atom.o byteArray.o
collection.o container.o internal.o list.o loop.o molecule.o oDouble.o
oInteger.o oString.o objekt.o parmSet.o residue.o unit.o unitio.o
graphUtil.o select.o amber.o build.o elements.o library.o chirality.o
minimizer.o model.o parmLib.o pdbFile.o tools.o variables.o parser.o
help.o helptext.o octree.o commands.o mathop.o block.o restraint.o
hybrid.o xTank.o xAction.o x3d.o xBasics.o xaLeapc.o xaUnitEditor.o
xaTable.o xaAtomTable.o XrawRegistr.o xaCommand.o xaTools.o
xaAtomParmTable.o xaBondParmTable.o xaAngleParmTable.o xaParmEditor.o
xaTorsionParmTable.o xaImproperParmTable.o xaHBondParmTable.o -L../Wc
-lWcLeap -L../Xpm -lXpmLeap -L../Xraw -lXrawLeap -L/usr/openwin/lib
-lXmu -lm -lXt -lSM -lICE -lX11 -lXext -lsocket -lnsl -lintl -lw -lm
-lc /usr/ucblib/libucb.a -Bdynamic -R/etc/lib -Wl,-I/etc/lib/ld.so.1 -ldl
-Bstatic
ld: fatal: library -lSM: not found
ld: fatal: library -lICE: not found
ld: fatal: File processing errors. No output written to xaLeap
*** Error code 1
make: Fatal error: Command failed for target `xaLeap'
Current working directory /RAID/software/amber6/src/leap/src/leap
*** Error code 1
make: Fatal error: Command failed for target `all'

============================================================================

the Machine is : SunOS sunserver 5.8 Generic_108528-03 sun4u sparc
SUNW,Ultra-Enterprise

In case of Compaq Alpha system :
the Machine is : OSF1 Alphaserver V5.1 1885 alpha
I wish to install AMBER onto True Unix on Alphaserver.

please advise

sincerely yours

Swaminathan